{"id":29735,"date":"2024-08-23T13:26:41","date_gmt":"2024-08-23T11:26:41","guid":{"rendered":"https:\/\/fgu.antstudio.dev\/?post_type=vyzkumny-projekt&p=29735"},"modified":"2025-12-15T10:47:34","modified_gmt":"2025-12-15T09:47:34","slug":"chemoinformatics-resources","status":"publish","type":"vyzkumny-projekt","link":"https:\/\/fgu.cas.cz\/en\/research-project\/chemoinformatics-resources\/","title":{"rendered":"Bioinformatics"},"content":{"rendered":"
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Short-term internships:<\/h2>\n

Several software tools are currently being developed in the laboratory. We offer short-term internships (summer or semester-long) for bioinformatics students with programming skills (Python, C#, or Matlab) who are interested in biological or chemical projects. If you are interested, please send an email. These projects currently include:<\/p>\n\n\n\n\n\n
\"python+matlab\"<\/td>\nViLiFOG<\/strong> – Virtual Lipidome Fluxomics Object Generator (Python+Matlab)<\/td>\n<\/tr>\n
\"-\"<\/td>\nVM for hosting bioinfo web apps (linux+nginx+docker…)<\/td>\n<\/tr>\n
\"-\"<\/td>\nLORA implementation in R\/CLI\/Shiny<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Shared and published resources:<\/p>\n\n\n\n
\"-\" GitHub<\/td>\nhttps:\/\/github.com\/IPHYS-Bioinformatics<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n
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We run local instances of several services focused on Metabolomics, Lipidomics, Statistical analysis and Chemometrics. As the hardware resources are limited, these tools are available only within campus LAN.<\/p>\n<\/div>\n

All services are running in separate Docker containers:<\/p>\n

Contents:<\/h2>\n
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  1. Metaboanalyst – statistical, functional and integrative analysis of metabolomics data<\/a><\/li>\n
  2. ChemRICH – Chemical Similarity Enrichment Analysis for Metabolomics<\/a><\/li>\n
  3. CRediT (Contributor Roles Taxonomy) generator<\/a><\/li>\n
  4. MS-DIAL data processing benchmark<\/a><\/li>\n<\/ol>\n
    \n

    <\/a>Metaboanalyst – statistical, functional and integrative analysis of metabolomics data<\/h2>\n